PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29738.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family WRKY
Protein Properties Length: 321aa    MW: 35541.3 Da    PI: 10.2505
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29738.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.5e-31243300359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D+++WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp+++++tYegeH+h+
  KFK29738.1 243 DEFSWRKYGQKPIKGSPHPRGYYKCSTFrGCPARKHVERALDDPTMLIVTYEGEHRHN 300
                 99***********************8766****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.5E-17191239IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.0E-32228301IPR003657WRKY domain
PROSITE profilePS5081129.838236302IPR003657WRKY domain
SuperFamilySSF1182902.48E-26239301IPR003657WRKY domain
SMARTSM007743.3E-37241301IPR003657WRKY domain
PfamPF031061.6E-26243299IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAVDLMRFPK IDDQKAIQEA ASQGIQSMEH LIRLLSNRPE QHNNVDCSEI TDFTVSKFKT  60
VISLLNRTGH ARFRRGPVHS PLPPPQIVKI AQSEAPVTRK PTNLVPPPSS TFVHSNQPSV  120
TLDFTKPSIF GSKSKSSELE FAKENFSVSL NSSYISSAIT GDGSVSKGSS IFHASQPVTS  180
SGKPPLAHPY RKRCLEHEHS EDFSGKISGS GHGKCHCKKR KNRMKRTVRV PAISTKIADI  240
PPDEFSWRKY GQKPIKGSPH PRGYYKCSTF RGCPARKHVE RALDDPTMLI VTYEGEHRHN  300
QSAMQENISS SGVNDLVFAS A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-20229300272WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00464DAPTransfer from AT4G31550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527960.0AK352796.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-05-N09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432849.10.0PREDICTED: probable WRKY transcription factor 11 isoform X2
SwissprotQ9SV150.0WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLA0A087GIN60.0A0A087GIN6_ARAAL; Uncharacterized protein
STRINGscaffold_701056.10.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.20.0WRKY DNA-binding protein 11